25 lines
790 B
Lua
25 lines
790 B
Lua
whatis([==[
|
|
Creates $USERAPPL environment variable and adds paths
|
|
]==])
|
|
|
|
local pyver = subprocess([[python --version 2>&1 | sed 's/.*\([23]\.[0-9]\).*/\1/']])
|
|
if pyver:sub(1, 1) == "2" then
|
|
LmodError("Must have Python 3 loaded")
|
|
end
|
|
|
|
local home = os.getenv("HOME")
|
|
local nobackup = pathJoin(home, "nobackup")
|
|
local userappl = pathJoin(nobackup, "appl")
|
|
local git = pathJoin(nobackup, "git")
|
|
local pythonp = pathJoin(userappl, "lib", "python" .. pyver, "site-packages")
|
|
local binp = pathJoin(userappl, "bin")
|
|
local libp = pathJoin(userappl, "lib")
|
|
|
|
setenv("MYNOBACKUP", nobackup)
|
|
setenv("USERAPPL", userappl)
|
|
|
|
prepend_path("PYTHONPATH", pythonp)
|
|
prepend_path("PATH", binp)
|
|
prepend_path("PATH", libp)
|
|
execute {cmd='`snakemake --bash-completion`', modeA={"load"}}
|