26 lines
833 B
Lua
26 lines
833 B
Lua
whatis([==[
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Creates $USERAPPL environment variable and adds paths
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]==])
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local pyver = subprocess([[python --version 2>&1 | sed 's/.*\([23]\.[0-9]\).*/\1/']])
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if pyver:sub(1, 1) == "2" then
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LmodError("Must have Python 3 loaded")
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end
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local home = os.getenv("HOME")
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local nobackup = pathJoin(home, "nobackup")
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local userappl = pathJoin(nobackup, "appl")
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local git = pathJoin(nobackup, "git")
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local pythonp = pathJoin(userappl, "lib", "python" .. pyver, "site-packages")
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local binp = pathJoin(userappl, "bin")
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local libp = pathJoin(userappl, "lib")
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setenv("MYNOBACKUP", nobackup)
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setenv("USERAPPL", userappl)
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prepend_path("PYTHONPATH", pythonp)
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prepend_path("PYTHONPATH", ".")
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prepend_path("PATH", binp)
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prepend_path("LD_LIBRARY_PATH", libp)
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execute {cmd='`snakemake --bash-completion`', modeA={"load"}}
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