From fb4fe04c1263ae0028cdb0378a779c63d11055ff Mon Sep 17 00:00:00 2001
From: Jakub Fojt <jakub.fojt96@gmail.com>
Date: Tue, 3 Mar 2020 10:45:19 +0100
Subject: [PATCH] Clusterappl and GPAW modules on Vera

---
 .bashrc.kuba                       |  6 ++++++
 .modules.kuba/clusterappl.lua      | 20 ++++++++++++++++++++
 .modules.kuba/gpaw/.version        |  0
 .modules.kuba/gpaw/Vera/20.1.0.lua | 29 +++++++++++++++++++++++++++++
 4 files changed, 55 insertions(+)
 create mode 100644 .modules.kuba/clusterappl.lua
 create mode 100644 .modules.kuba/gpaw/.version
 create mode 100644 .modules.kuba/gpaw/Vera/20.1.0.lua

diff --git a/.bashrc.kuba b/.bashrc.kuba
index 7114704..dece0d1 100755
--- a/.bashrc.kuba
+++ b/.bashrc.kuba
@@ -30,6 +30,12 @@ if [ -e /usr/share/lmod/lmod/init/profile ]; then
    module load python-wrap
 fi
 
+case $hostname in
+    vera* )
+        module load clusterappl
+        module load gpaw/Vera/20.1.0
+esac
+
 if xhost >& /dev/null ; then
     # X is running
     xhost +local:kuba > /dev/null
diff --git a/.modules.kuba/clusterappl.lua b/.modules.kuba/clusterappl.lua
new file mode 100644
index 0000000..ab8aeca
--- /dev/null
+++ b/.modules.kuba/clusterappl.lua
@@ -0,0 +1,20 @@
+whatis([==[
+Creates $USERAPPL environment variable and adds paths
+]==])
+
+local home      = os.getenv("HOME")
+local nobackup  = pathJoin(home, "nobackup")
+local userappl  = pathJoin(nobackup, "appl")
+local git       = pathJoin(nobackup, "git")
+
+local pythonp   = pathJoin(userappl, "lib/python3.7/site-packages")
+local binp      = pathJoin(userappl, "bin")
+local libp      = pathJoin(userappl, "lib")
+
+setenv("MYNOBACKUP", nobackup)
+setenv("USERAPPL", userappl)
+
+prepend_path("PYTHONPATH", pythonp)
+prepend_path("PATH", binp)
+prepend_path("PATH", libp)
+execute {cmd='`snakemake --bash-completion`', modeA={"load"}}
diff --git a/.modules.kuba/gpaw/.version b/.modules.kuba/gpaw/.version
new file mode 100644
index 0000000..e69de29
diff --git a/.modules.kuba/gpaw/Vera/20.1.0.lua b/.modules.kuba/gpaw/Vera/20.1.0.lua
new file mode 100644
index 0000000..be1bf03
--- /dev/null
+++ b/.modules.kuba/gpaw/Vera/20.1.0.lua
@@ -0,0 +1,29 @@
+whatis([==[My compiled version of GPAW]==])
+
+conflict("GPAW")
+
+function ld (m)
+    if not ( isloaded(m) ) then
+        load(m)
+    end
+end
+
+ld("clusterappl")
+
+local nobackup = os.getenv("MYNOBACKUP")
+local root     = pathJoin(nobackup, "git/gpaw/20.1.0")
+
+ld("iccifort/2019.5.281")
+ld("impi/2018.5.288")
+ld("imkl/2019.5.281")
+ld("Python/3.7.4")
+ld("SciPy-bundle/2019.10-Python-3.7.4")
+ld("ASE/3.19.0-Python-3.7.4")
+ld("libxc/4.3.4")
+ld("gpaw-setups/0.9.20000")
+
+setenv("OMP_NUM_THREADS", 1)
+prepend_path("PATH", pathJoin(root, "tools"))
+prepend_path("PYTHONPATH", root)
+prepend_path("PYTHONPATH", pathJoin(root, "build/lib.linux-x86_64-3.7"))
+execute {cmd='complete -o default -C "/usr/bin/python3 ' .. root .. '/gpaw/cli/complete.py" gpaw', modeA={"load"}}